STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_014260Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (503 aa)    
Predicted Functional Partners:
SOVF_075570
Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.956
SOVF_094420
Uncharacterized protein.
     
 0.938
SOVF_186450
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
  
 0.937
SOVF_084120
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
  
 0.937
SOVF_066440
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
  
 0.937
SOVF_186470
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
  
 0.935
SOVF_042020
Uncharacterized protein.
     
 0.916
SOVF_098190
Uncharacterized protein.
 
    
 0.901
SOVF_014280
Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 
0.900
SOVF_212440
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.877
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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