STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_017550LITAF domain-containing protein. (157 aa)    
Predicted Functional Partners:
SOVF_161340
RAB3GAP2_N domain-containing protein.
   
 0.947
SOVF_160380
RAB3GAP2_N domain-containing protein.
   
 0.947
SOVF_123240
Uncharacterized protein.
    
 0.694
SOVF_089760
Uncharacterized protein.
    
 0.694
SOVF_116870
Rab proteins geranylgeranyltransferase component; Substrate-binding subunit of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins; Belongs to the Rab GDI family.
   
 
 0.658
SOVF_032740
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
     
 0.621
SOVF_143420
Uncharacterized protein.
   
 
 0.614
SOVF_132460
Uncharacterized protein.
     
 0.564
SOVF_039870
Uncharacterized protein.
     
 0.564
SOVF_034760
Uncharacterized protein.
   
 
 0.423
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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