STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_005730Uncharacterized protein. (697 aa)    
Predicted Functional Partners:
SOVF_192360
HDAC_interact domain-containing protein.
   
 
 0.841
SOVF_095600
HDAC_interact domain-containing protein.
   
 
 0.841
SOVF_054070
MRG domain-containing protein.
    
 
 0.841
SOVF_058280
MRG domain-containing protein.
    
 
 0.841
SOVF_077050
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 
 0.762
SOVF_079190
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 
 0.762
SOVF_005010
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 
 0.762
SOVF_142200
WD_REPEATS_REGION domain-containing protein.
    
 
 0.635
SOVF_112610
WD_REPEATS_REGION domain-containing protein.
    
 
 0.635
SOVF_092630
WD_REPEATS_REGION domain-containing protein.
    
 
 0.635
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.