STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_000050Uncharacterized protein. (1344 aa)    
Predicted Functional Partners:
SOVF_129660
Uncharacterized protein.
    
 0.959
SOVF_049100
MPN domain-containing protein.
    
 0.935
SOVF_113350
DUF1767 domain-containing protein.
    
 
 0.890
SOVF_132700
Uncharacterized protein.
    
 0.872
SOVF_185050
ERCC4 domain-containing protein.
    
 0.870
SOVF_097700
ERCC4 domain-containing protein.
    
 0.870
SOVF_202690
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
    
 0.826
SOVF_129770
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
    
 0.826
SOVF_018240
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
    
 0.826
SOVF_023900
DNA polymerase.
   
 
 0.813
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.