STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_000180Uncharacterized protein. (322 aa)    
Predicted Functional Partners:
SOVF_000170
Flavodoxin-like domain-containing protein.
 
      0.873
SOVF_155910
SAM_MT_TRM5_TYW2 domain-containing protein.
  
 
 0.851
SOVF_208410
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
    
  0.622
SOVF_028960
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
    
  0.622
SOVF_064330
Uncharacterized protein.
 
 
    0.582
SOVF_170280
Protein-L-isoaspartate O-methyltransferase.
   
    0.443
SOVF_177380
WD_REPEATS_REGION domain-containing protein.
   
    0.437
SOVF_178500
WD_REPEATS_REGION domain-containing protein.
   
 
 0.429
SOVF_010380
Uncharacterized protein.
      
 0.426
SOVF_022210
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
  
 0.420
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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