STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_002940Uncharacterized protein. (925 aa)    
Predicted Functional Partners:
SOVF_156450
Uncharacterized protein.
   
 0.988
SOVF_005580
Uncharacterized protein.
    
 0.957
SOVF_081840
BRF1 domain-containing protein.
    
 0.941
SOVF_177770
SANT domain-containing protein.
   
 0.922
SOVF_160910
SANT domain-containing protein.
   
 0.922
SOVF_023860
HTH myb-type domain-containing protein.
   
 0.922
SOVF_111570
Uncharacterized protein.
    
 0.912
SOVF_076520
Uncharacterized protein.
    
 0.910
SOVF_045280
Uncharacterized protein.
    
 0.910
SOVF_034890
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.847
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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