STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ32792.1DegT/DnrJ/EryC1/StrS aminotransferase family protein; Belongs to the DegT/DnrJ/EryC1 family. (406 aa)    
Predicted Functional Partners:
SDQ30556.1
NDP-4-keto-2,6-dideoxyhexose 3-C-methyltransferase.
 
  
 0.819
SDR14588.1
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family.
  
  
 0.768
SDQ30947.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
  
     0.745
gmd
GDPmannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
 
 0.735
SDQ30862.1
Oxidase EvaA.
  
 
 0.721
SDQ52285.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 
 0.718
SDQ29760.1
3-amino-5-hydroxybenzoate synthase; Belongs to the DegT/DnrJ/EryC1 family.
  
     0.716
SDQ71191.1
UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing); Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
  
 0.715
SDQ30903.1
UDP-glucose 4-epimerase.
 
 
  0.707
SDQ29807.1
AHBA synthesis associated protein.
    
  0.700
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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