STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ44735.1PD-(D/E)XK nuclease superfamily protein. (305 aa)    
Predicted Functional Partners:
SDQ43998.1
ATP-dependent DNA helicase, Rep family.
   
  0.807
SDQ44258.1
DNA helicase-2 / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily.
 
 
  0.567
SDQ51257.1
TIGR00375 family protein.
 
 
  0.554
SDQ84820.1
Hypothetical protein.
  
     0.534
SDQ58950.1
Methyltransferase domain-containing protein.
  
     0.530
SDQ96020.1
Acyl-CoA thioesterase.
  
     0.490
SDQ44288.1
Superfamily I DNA or RNA helicase; Belongs to the helicase family. UvrD subfamily.
   
  0.478
SDQ45740.1
UvrD/REP helicase N-terminal domain-containing protein.
   
  0.478
SDQ85702.1
ATP-dependent DNA helicase PcrA.
   
  0.478
SDQ44760.1
Glyoxylase, beta-lactamase superfamily II.
  
    0.475
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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