STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ44856.1Membrane protease YdiL, CAAX protease family. (371 aa)    
Predicted Functional Partners:
SDR04177.1
Hypothetical protein.
  
     0.651
SDR04557.1
Ribosomal protein S12 methylthiotransferase accessory factor.
 
  
 0.582
SDR03496.1
Quinol monooxygenase YgiN.
  
     0.531
SDQ79112.1
Hypothetical protein.
  
     0.518
SDQ36512.1
Hypothetical protein.
  
     0.507
SDQ44882.1
Citrate lyase subunit beta / citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
 
     0.495
SDR17569.1
Regulatory protein, luxR family.
  
     0.472
SDQ67921.1
PAS domain S-box-containing protein.
  
    0.443
SDR31793.1
Hypothetical protein.
  
     0.425
SDR27712.1
Hypothetical protein.
  
     0.409
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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