STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ48686.1Hypothetical protein. (438 aa)    
Predicted Functional Partners:
SDQ48777.1
Polysaccharide biosynthesis C-terminal domain-containing protein.
  
  
 0.904
SDQ48656.1
Chain length determinant protein.
 
  
 0.870
SDQ48743.1
Sulfotransferase domain-containing protein.
       0.828
SDR04902.1
Hypothetical protein.
  
  
 0.811
SDQ48712.1
Hypothetical protein.
  
    0.792
SDQ48800.1
Sulfotransferase family protein.
       0.773
SDQ48992.1
Undecaprenyl-phosphate galactose phosphotransferase, WbaP/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
  
 0.659
SDQ52342.1
Hypothetical protein.
  
  
 0.611
SDQ33161.1
Protein of unknown function.
    
  0.563
SDQ31586.1
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.
    
  0.562
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.