STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ50210.1DNA-binding transcriptional regulator, MarR family. (165 aa)    
Predicted Functional Partners:
SDQ50178.1
DNA-binding transcriptional regulator, MarR family.
 
     0.781
SDR33060.1
DNA-binding transcriptional regulator, MarR family.
  
     0.635
SDR27233.1
Protein of unknown function.
  
     0.463
SDR32410.1
Endonuclease, Uma2 family (restriction endonuclease fold).
  
     0.441
SDR16469.1
Sugar diacid utilization regulator.
  
     0.437
SDQ64962.1
Aminoglycoside 6'-N-acetyltransferase.
  
     0.406
SDR04323.1
Predicted ATPase.
  
     0.402
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.