STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ53214.1Hypothetical protein. (170 aa)    
Predicted Functional Partners:
SDQ30066.1
Hypothetical protein.
  
 
 0.619
SDQ81042.1
Lysophospholipase L1.
  
     0.571
SDR27801.1
Hypothetical protein.
  
    0.531
SDQ53186.1
Helicase conserved C-terminal domain-containing protein.
       0.504
SDQ42524.1
Hypothetical protein.
  
     0.482
SDQ72136.1
Catechol 2,3-dioxygenase.
  
     0.440
SDR12427.1
PA domain-containing protein.
  
     0.418
SDQ33581.1
GDSL-like Lipase/Acylhydrolase family protein.
  
     0.412
SDQ89550.1
Hypothetical protein.
  
     0.410
SDR31926.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
  
     0.409
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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