STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ53657.1Type VII secretion-associated serine protease mycosin. (441 aa)    
Predicted Functional Partners:
SDR31606.1
Subtilase family protein.
  
     0.745
SDQ43079.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
  
 
 0.652
SDQ86818.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
  
 
 0.652
SDR11605.1
Subtilase family protein; Belongs to the peptidase S8 family.
  
     0.650
SDQ53684.1
Hypothetical protein.
       0.545
SDQ42445.1
Type VII secretion protein EccB.
 
 0.474
SDQ55812.1
Deoxyribonuclease NucA/NucB.
  
  0.474
SDQ60186.1
Small secreted domain.
  
 0.452
secY
Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
   0.432
SDQ66976.1
Trypsin.
  
 
 0.419
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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