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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ57870.1N-acetylmuramoyl-L-alanine amidase. (502 aa)    
Predicted Functional Partners:
SDR13220.1
Peptidase_C39 like family protein.
 
     0.754
SDR25040.1
Hypothetical protein.
  
     0.656
SDQ39562.1
Uncharacterized lipoprotein YddW, UPF0748 family.
     0.628
SDR27106.1
Uncharacterized lipoprotein YddW, UPF0748 family.
     0.572
SDQ96001.1
Protein of unknown function.
  
     0.450
SDQ62033.1
DNA-binding transcriptional activator of the SARP family.
  
     0.447
SDQ57895.1
CHAP domain-containing protein.
       0.438
SDR24998.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
  
     0.411
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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