STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ67549.1Membrane associated serine protease, rhomboid family. (290 aa)    
Predicted Functional Partners:
SDQ55182.1
N-acetylmuramoyl-L-alanine amidase.
  
   0.898
SDQ45152.1
Sec-independent protein translocase protein TatB.
   
 
 0.825
tatA
Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.825
ftsH
Membrane protease FtsH catalytic subunit; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
 
 0.763
SDQ52575.1
Regulator of protease activity HflC, stomatin/prohibitin superfamily.
   
 0.701
SDQ72816.1
Regulator of protease activity HflC, stomatin/prohibitin superfamily.
   
 0.701
SDR02047.1
SPFH domain / Band 7 family protein.
   
 0.701
SDR11984.1
Regulator of protease activity HflC, stomatin/prohibitin superfamily.
   
 0.701
SDR12004.1
Regulator of protease activity HflC, stomatin/prohibitin superfamily.
   
 0.701
SDR32420.1
Regulator of protease activity HflC, stomatin/prohibitin superfamily.
   
 0.701
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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