Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SDQ68077.1Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family. (155 aa)    
Predicted Functional Partners:
SDQ82172.1
PAS domain S-box-containing protein.
 
 0.993
SDQ41109.1
Serine/threonine-protein kinase RsbW.
  
 
 0.886
SDR12771.1
PAS domain S-box-containing protein.
 
 0.863
SDQ34556.1
Histidine kinase-like ATPase domain-containing protein.
 
  0.854
SDR24828.1
Stage II sporulation protein E (SpoIIE).
  
  0.854
SDQ71971.1
Serine phosphatase RsbU, regulator of sigma subunit; Manually curated.
 
  0.853
SDR33017.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
  0.849
SDR31772.1
PAS domain S-box-containing protein.
 
 0.845
SDR33078.1
Stage II sporulation protein E (SpoIIE).
  
  0.838
SDQ98854.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
  0.825
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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