STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ68319.1MinD-like ATPase involved in chromosome partitioning or flagellar assembly. (1022 aa)    
Predicted Functional Partners:
SDQ43049.1
Type VII secretion integral membrane protein EccD.
 
  
 0.648
SDQ42761.1
WXG100 family type VII secretion target; Belongs to the WXG100 family.
   
 
 0.646
SDR23244.1
Hypothetical protein.
  
  
 0.566
SDR30554.1
Protein of unknown function.
  
     0.550
SDQ41133.1
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; Belongs to the sigma-70 factor family.
 
  
 0.538
SDQ68295.1
Putative NAD(P)H quinone oxidoreductase, PIG3 family.
       0.522
SDR12825.1
RNA polymerase sigma-B factor; Belongs to the sigma-70 factor family.
 
  
 0.519
SDQ42717.1
WXG100 family type VII secretion target; Belongs to the WXG100 family.
   
 
 0.488
SDQ38674.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.483
SDQ68275.1
Protein of unknown function.
       0.467
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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