STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ69591.1Osmoprotectant transport system permease protein. (252 aa)    
Predicted Functional Partners:
SDQ69573.1
Osmoprotectant transport system substrate-binding protein.
 
 0.998
SDQ75032.1
Osmoprotectant transport system substrate-binding protein.
 
 0.994
SDQ69617.1
Osmoprotectant transport system ATP-binding protein.
 0.989
SDQ39814.1
Osmoprotectant transport system substrate-binding protein.
 
 0.972
SDQ75081.1
Osmoprotectant transport system ATP-binding protein.
 0.953
SDQ39889.1
Osmoprotectant transport system ATP-binding protein.
 0.951
SDQ69637.1
Osmoprotectant transport system permease protein.
 
  
 
0.933
SDQ39861.1
Osmoprotectant transport system permease protein.
  
  
 
0.773
SDQ69659.1
Hypothetical protein.
       0.760
SDQ69685.1
DNA-binding transcriptional regulator, IclR family.
       0.757
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.