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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ73494.1Saccharopine dehydrogenase NADP binding domain-containing protein. (371 aa)    
Predicted Functional Partners:
SDR27370.1
Amino acid adenylation domain-containing protein.
 
 
 0.784
SDQ31071.1
Phosphopantetheine attachment site.
 
 
 0.711
SDQ39429.1
Monoamine oxidase.
  
 
  0.575
SDQ85104.1
L-2,4-diaminobutyrate decarboxylase.
    
 0.568
SDR06663.1
Alanine dehydrogenase; Belongs to the AlaDH/PNT family.
    
  0.565
SDQ30752.1
Condensation domain-containing protein.
 
 
 0.561
SDR27363.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
 
 
 0.558
SDQ29570.1
Acyl transferase domain-containing protein.
 
   
 0.551
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
  0.546
SDQ44228.1
Diaminopimelate decarboxylase.
  
 
 0.528
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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