Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDQ82093.1 | SDR15336.1 | SAMN04489764_2251 | SAMN04489764_3743 | Predicted arabinose efflux permease, MFS family. | Major Facilitator Superfamily protein. | 0.552 |
SDQ82093.1 | SDR25297.1 | SAMN04489764_2251 | SAMN04489764_4484 | Predicted arabinose efflux permease, MFS family. | Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.449 |
SDQ82093.1 | SDR33086.1 | SAMN04489764_2251 | SAMN04489764_5246 | Predicted arabinose efflux permease, MFS family. | Predicted acetyltransferase. | 0.523 |
SDQ82093.1 | pdxH | SAMN04489764_2251 | SAMN04489764_2250 | Predicted arabinose efflux permease, MFS family. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.607 |
SDR15336.1 | SDQ82093.1 | SAMN04489764_3743 | SAMN04489764_2251 | Major Facilitator Superfamily protein. | Predicted arabinose efflux permease, MFS family. | 0.552 |
SDR25297.1 | SDQ82093.1 | SAMN04489764_4484 | SAMN04489764_2251 | Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | Predicted arabinose efflux permease, MFS family. | 0.449 |
SDR33086.1 | SDQ82093.1 | SAMN04489764_5246 | SAMN04489764_2251 | Predicted acetyltransferase. | Predicted arabinose efflux permease, MFS family. | 0.523 |
pdxH | SDQ82093.1 | SAMN04489764_2250 | SAMN04489764_2251 | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | Predicted arabinose efflux permease, MFS family. | 0.607 |