STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ86844.1Hypothetical protein. (232 aa)    
Predicted Functional Partners:
SDQ86868.1
Hypothetical protein.
 
  
 0.969
SDQ86991.1
TadE-like protein.
 
    0.964
SDQ86919.1
Flp pilus assembly protein TadB.
 
    0.963
SDQ86945.1
Hypothetical protein.
 
    0.963
SDQ87017.1
TadE-like protein.
 
    0.950
SDQ86892.1
Pilus assembly protein, ATPase of CpaF family.
 
    0.916
SDQ87064.1
Transcriptional activator domain-containing protein.
 
     0.870
SDQ82172.1
PAS domain S-box-containing protein.
  
  
 0.816
SDQ41133.1
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; Belongs to the sigma-70 factor family.
  
  
 0.805
SDR12825.1
RNA polymerase sigma-B factor; Belongs to the sigma-70 factor family.
  
  
 0.805
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.