STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ89250.1Uncharacterized membrane protein YckC, RDD family. (314 aa)    
Predicted Functional Partners:
SDQ89464.1
Uncharacterized membrane protein SpoIIM, required for sporulation.
 
    0.863
SDQ89496.1
Uncharacterized conserved protein, DUF58 family, contains vWF domain.
 
    0.788
SDQ89608.1
Membrane domain of glycerophosphoryl diester phosphodiesterase.
 
     0.787
SDQ89550.1
Hypothetical protein.
 
    0.778
SDQ89578.1
Protein of unknown function.
 
    0.778
SDQ89524.1
MoxR-like ATPase.
 
    0.508
SDQ81117.1
Protein of unknown function.
  
     0.450
SDQ75849.1
Phospholipase_D-nuclease N-terminal.
  
     0.442
SDQ89281.1
ADP-ribose pyrophosphatase YjhB, NUDIX family; Belongs to the Nudix hydrolase family.
       0.442
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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