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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ96817.1ABC-2 type transport system ATP-binding protein. (323 aa)    
Predicted Functional Partners:
SDQ96791.1
ABC-2 type transport system permease protein.
 
    0.933
SDR28700.1
ABC-2 type transport system permease protein.
 
 
 0.830
SDQ57975.1
ABC transporter efflux protein, DrrB family.
 
 
 0.821
SDR14902.1
ABC-2 type transport system permease protein.
  
    0.805
SDQ92931.1
ABC-2 type transport system permease protein.
 
    0.795
SDQ92802.1
ABC-2 type transport system permease protein.
 
 
 0.791
SDQ46837.1
Lipooligosaccharide transport system permease protein.
  
 
  0.712
SDQ56143.1
ABC-2 type transport system permease protein.
  
 0.685
SDR25977.1
ABC-2 type transport system permease protein.
  
    0.604
SDQ96837.1
DNA-binding transcriptional regulator, PadR family.
 
    0.550
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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