node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplD | rpsB | SAMN04489764_2288 | SAMN04489764_2873 | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
rplD | rpsC | SAMN04489764_2288 | SAMN04489764_2293 | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
rplD | rpsE | SAMN04489764_2288 | SAMN04489764_2304 | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
rplD | rpsF | SAMN04489764_2288 | SAMN04489764_1469 | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
rplD | rpsG | SAMN04489764_2288 | SAMN04489764_2283 | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
rplD | rpsI | SAMN04489764_2288 | SAMN04489764_2323 | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. | 0.998 |
rplD | rpsK | SAMN04489764_2288 | SAMN04489764_2314 | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
rplD | rpsM | SAMN04489764_2288 | SAMN04489764_2313 | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
rplD | rpsP | SAMN04489764_2288 | SAMN04489764_2857 | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.991 |
rplD | rpsS | SAMN04489764_2288 | SAMN04489764_2291 | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.999 |
rpsB | rplD | SAMN04489764_2873 | SAMN04489764_2288 | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | 0.999 |
rpsB | rpsC | SAMN04489764_2873 | SAMN04489764_2293 | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
rpsB | rpsE | SAMN04489764_2873 | SAMN04489764_2304 | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
rpsB | rpsF | SAMN04489764_2873 | SAMN04489764_1469 | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
rpsB | rpsG | SAMN04489764_2873 | SAMN04489764_2283 | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
rpsB | rpsI | SAMN04489764_2873 | SAMN04489764_2323 | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
rpsB | rpsK | SAMN04489764_2873 | SAMN04489764_2314 | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
rpsB | rpsM | SAMN04489764_2873 | SAMN04489764_2313 | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
rpsB | rpsP | SAMN04489764_2873 | SAMN04489764_2857 | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
rpsB | rpsS | SAMN04489764_2873 | SAMN04489764_2291 | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.999 |