STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ99564.1DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains. (290 aa)    
Predicted Functional Partners:
SDQ99588.1
Uncharacterized protein, contains SIS (Sugar ISomerase) phosphosugar binding domain.
 
     0.913
SDQ99542.1
BadF/BadG/BcrA/BcrD ATPase family protein.
 
     0.799
SDQ99606.1
N-acetylglucosamine transport system substrate-binding protein.
 
     0.786
SDQ77065.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
 
  0.764
SDQ99649.1
N-acetylglucosamine transport system permease protein.
 
     0.659
SDQ99626.1
N-acetylglucosamine transport system permease protein.
 
     0.651
SDR18014.1
Mannose-1-phosphate guanylyltransferase / phosphomannomutase.
  
 
  0.605
SDR26065.1
Glucose-6-phosphate isomerase; Belongs to the GPI family.
    
 0.580
SDR28340.1
Mannose-6-phosphate isomerase, type 1.
  
 
 0.534
SDR24681.1
6-phospho-beta-glucosidase.
 
 
 0.509
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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