STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR00725.1L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (363 aa)    
Predicted Functional Partners:
SDR00746.1
5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
 
  
  0.940
SDR00771.1
Nucleoside-diphosphate-sugar epimerase.
 
     0.908
SDR00699.1
Predicted dehydrogenase.
 
     0.845
SDR22945.1
Galactonate dehydratase.
  
  
 
0.775
SDR00796.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
       0.773
SDR00818.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
       0.773
SDR28269.1
D-mannonate dehydratase.
  
  
 
0.770
SDQ29570.1
Acyl transferase domain-containing protein.
  
 
  0.751
SDQ33927.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
  
  0.684
SDR28847.1
O-succinylbenzoate synthase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.657
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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