STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR08486.1Carbohydrate ABC transporter substrate-binding protein, CUT1 family. (431 aa)    
Predicted Functional Partners:
SDR08506.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
  0.996
SDR08525.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
  0.966
rbsA
Monosaccharide ABC transporter ATP-binding protein, CUT2 family; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
     
  0.900
SDR08560.1
Hypothetical protein.
       0.773
SDQ33645.1
Raffinose/stachyose/melibiose transport system permease protein.
 
 0.734
SDQ35503.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
  
  0.719
SDR31942.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
  
  0.701
SDQ99626.1
N-acetylglucosamine transport system permease protein.
  
 0.693
SDR24192.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
  
 0.692
SDQ35185.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
 0.664
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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