STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR12982.1Fe-S cluster assembly iron-binding protein IscA. (108 aa)    
Predicted Functional Partners:
SDR25874.1
Nitrogen fixation protein NifU.
  
  
 0.794
SDR20471.1
Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain.
  
 
 0.698
prfA
Bacterial peptide chain release factor 1 (bRF-1); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
     
 0.672
SDQ52285.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 
 0.625
SDR25921.1
Iron-regulated ABC transporter permease protein SufD.
  
 
 0.555
SDR25931.1
Iron-regulated ABC transporter membrane component SufB.
  
 
 0.555
SDQ39177.1
Cysteine desulfurase.
  
  
 0.551
SDR07918.1
Cysteine desulfurase.
  
  
 0.551
SDR25898.1
Fe-S cluster assembly ATP-binding protein.
  
 
 0.547
SDQ97773.1
Helix-turn-helix domain-containing protein.
  
     0.532
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.