STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR13885.1Hypothetical protein. (332 aa)    
Predicted Functional Partners:
SDR13960.1
Hypothetical protein.
 
    0.965
SDR13905.1
Hypothetical protein.
 
    0.960
SDR13925.1
Sulfatase.
 
     0.959
SDR13943.1
Oxygen-independent coproporphyrinogen-3 oxidase.
 
    0.958
SDQ98460.1
Hypothetical protein.
  
     0.493
SDQ75645.1
Bifunctional DNA primase/polymerase, N-terminal.
  
     0.490
SDQ51755.1
Hypothetical protein.
 
     0.421
SDR13868.1
Cytochrome P450.
       0.419
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.