STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR14529.1Hypothetical protein. (404 aa)    
Predicted Functional Partners:
SDR14510.1
Hypothetical protein.
    
 0.970
SDR14588.1
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family.
   
 0.953
SDR14569.1
Glycosyltransferase involved in cell wall bisynthesis.
 
   
 0.856
SDR21280.1
Lanthionine synthetase C-like protein.
  
     0.704
SDQ84845.1
Sugar-specific transcriptional regulator TrmB.
  
     0.667
SDR31926.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
  
     0.631
SDQ68348.1
Protein of unknown function.
  
     0.541
SDQ94110.1
Hypothetical protein.
  
     0.519
SDR12790.1
GAF domain-containing protein.
  
     0.492
SDR13327.1
Putative peptidoglycan binding domain-containing protein.
  
     0.490
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.