STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR15043.1Signal transduction histidine kinase. (469 aa)    
Predicted Functional Partners:
SDQ71951.1
GAF sensor hybrid histidine kinase.
   
0.983
SDR15061.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
   0.969
SDR28721.1
2-oxoisovalerate dehydrogenase E1 component.
   
 0.897
SDQ36040.1
Two-component system, OmpR family, response regulator MprA.
 
   0.864
SDR03703.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
   0.864
SDQ41961.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
   0.861
SDQ34150.1
Two-component system, OmpR family, response regulator PrrA.
 
   0.860
SDR31478.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
   0.859
SDR31210.1
Two-component system, OmpR family, response regulator; Non-canonical start codon; manually curated.
 
   0.858
SDQ81392.1
Two-component system, OmpR family, response regulator RegX3.
 
   0.855
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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