STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR15509.1Hypothetical protein. (223 aa)    
Predicted Functional Partners:
SDQ71951.1
GAF sensor hybrid histidine kinase.
   
 0.927
SDR15494.1
Predicted oxidoreductase.
 
     0.807
SDQ65503.1
Signal transduction histidine kinase.
   
 0.665
SDR13220.1
Peptidase_C39 like family protein.
  
    0.610
SDR31090.1
Helix-turn-helix domain-containing protein.
  
     0.601
SDQ74488.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.581
SDR27519.1
Signal transduction histidine kinase.
  
  0.581
SDQ29412.1
Regulatory protein, luxR family.
 
  0.534
SDR33660.1
Regulatory protein, luxR family.
 
  0.534
SDQ99180.1
Hypothetical protein.
  
     0.519
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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