STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR18667.1Nitroimidazol reductase NimA, pyridoxamine 5'-phosphate oxidase superfamily. (224 aa)    
Predicted Functional Partners:
SDR18825.1
Trehalose and maltose hydrolase (possible phosphorylase).
      0.611
SDR18684.1
Nucleotide-binding universal stress protein, UspA family.
 
  
 0.603
nadE
NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
  0.517
SDR25731.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
  
     0.492
SDR17486.1
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/beta-phosphoglucomutase family hydrolase.
      0.486
SDR30981.1
Predicted ATP-dependent carboligase, ATP-grasp superfamily.
   
    0.457
SDR12790.1
GAF domain-containing protein.
  
     0.451
SDR24946.1
Predicted transcriptional regulator, ArsR family.
  
    0.424
SDR14529.1
Hypothetical protein.
  
     0.419
SDR16910.1
Uncharacterized conserved protein.
  
     0.412
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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