STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR19901.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (224 aa)    
Predicted Functional Partners:
SDR19916.1
Two-component system, NarL family, sensor histidine kinase UhpB.
  0.949
SDQ71951.1
GAF sensor hybrid histidine kinase.
   
 0.927
SDQ74488.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  0.784
SDR32020.1
Signal transduction histidine kinase.
 
  0.779
SDQ36792.1
Signal transduction histidine kinase.
 
  0.753
SDQ94698.1
Signal transduction histidine kinase.
 
  0.731
SDQ66954.1
Signal transduction histidine kinase.
  
  0.720
SDR27519.1
Signal transduction histidine kinase.
 
 0.712
SDQ62888.1
Signal transduction histidine kinase.
  
  0.688
SDR25201.1
Signal transduction histidine kinase.
 
  0.688
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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