STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR21668.1Thiopeptide-type bacteriocin biosynthesis domain-containing protein. (978 aa)    
Predicted Functional Partners:
SDR21655.1
Lanthionine synthetase C-like protein.
 
   
 0.968
SDQ29570.1
Acyl transferase domain-containing protein.
 
 
 0.839
SDR33354.1
uroporphyrinogen-III C-methyltransferase.
    
 0.820
SDQ75594.1
uroporphyrinogen-III synthase.
  
 
 0.773
SDR04557.1
Ribosomal protein S12 methylthiotransferase accessory factor.
  
  
 0.748
SDR30878.1
Probable phosphoglycerate mutase.
  
 
 0.743
SDQ44497.1
Adenylyltransferase and sulfurtransferase.
    
  0.726
SDR21644.1
Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase).
  
    0.700
SDR21680.1
Hypothetical protein.
       0.561
SDR21691.1
Hypothetical protein.
  
  
 0.557
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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