STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR23400.1Hypothetical protein. (246 aa)    
Predicted Functional Partners:
SDQ85567.1
Phage shock protein PspC (stress-responsive transcriptional regulator).
  
  
 0.805
SDR23424.1
Hypothetical protein.
  
    0.762
SDR23412.1
ABC-type multidrug transport system, ATPase component.
  
    0.748
SDQ45538.1
Hypothetical protein.
    
   0.489
SDR05952.1
Streptogrisin C.
    
   0.489
SDR23434.1
Lysophospholipase L1.
       0.487
SDR23392.1
Signal transduction histidine kinase.
  
    0.466
SDQ33768.1
Uncharacterized protein YjbI, contains pentapeptide repeats.
    
   0.412
SDQ81656.1
Pentapeptide repeat-containing protein.
    
   0.412
SDQ94796.1
Pentapeptide repeat-containing protein.
    
   0.412
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.