STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR23476.1CRISPR-associated protein. (728 aa)    
Predicted Functional Partners:
SDR23538.1
Hypothetical protein.
 
 
 0.996
SDR23518.1
CRISPR/Cas system CSM-associated protein Csm3, group 7 of RAMP superfamily.
 
     0.959
SDR23527.1
CRISPR-associated protein Csx10.
 
     0.950
SDR23599.1
CRISPR-associated protein, Cas5t family.
 
   
 0.829
SDR23590.1
CRISPR-associated helicase, Cas3 family.
 
   
 0.825
SDR23484.1
CRISPR-associated protein, TIGR03984 family.
       0.807
SDR23549.1
Hypothetical protein.
       0.773
SDR23607.1
CRISPR-associated autoregulator, Cst2 family.
  
     0.772
SDQ72448.1
Nucleoside-binding protein.
  
     0.706
SDR23578.1
CRISPR-associated exonuclease, Cas4 family; Manually curated.
 
     0.646
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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