STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR27971.1NB-ARC domain-containing protein. (1294 aa)    
Predicted Functional Partners:
SDR27992.1
Uncharacterized protein.
 
     0.897
SDR27983.1
FxsC C-terminal domain-containing protein.
       0.828
ureD
Urease accessory protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
  
     0.755
SDR21232.1
Fibronectin type III domain-containing protein.
  
     0.752
ureF
Urease accessory protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
  
     0.687
SDR27958.1
Pimeloyl-ACP methyl ester carboxylesterase; Manually curated.
  
     0.686
SDR21280.1
Lanthionine synthetase C-like protein.
  
     0.577
SDR23244.1
Hypothetical protein.
  
  
 0.566
SDR12427.1
PA domain-containing protein.
  
     0.541
SDQ33581.1
GDSL-like Lipase/Acylhydrolase family protein.
  
     0.529
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.