STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR29383.1Cupin. (223 aa)    
Predicted Functional Partners:
SDR29392.1
Uncharacterized membrane protein YeiB.
  
    0.715
SDQ36997.1
Helix-turn-helix.
  
 0.696
SDR29415.1
Hypothetical protein; Manually curated.
    
  0.668
SDR29404.1
Predicted amidohydrolase.
  
    0.616
SDR29426.1
Hypothetical protein.
       0.611
SDQ31052.1
Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family.
    
 0.520
SDR29033.1
4-carboxymuconolactone decarboxylase.
    
 0.507
SDR20077.1
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
   
 0.505
pheA
Prephenate dehydratase.
  
 
 0.500
SDQ86556.1
Mannose-6-phosphate isomerase, cupin superfamily.
  
  0.486
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.