STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR33171.1Nuclease-related domain-containing protein. (255 aa)    
Predicted Functional Partners:
SDQ71831.1
Uncharacterized conserved protein, LabA/DUF88 family.
 
 
   0.793
SDQ46338.1
AAA-like domain-containing protein.
 
  
 0.788
SDR25661.1
Sulfotransferase family protein.
  
     0.773
SDR31793.1
Hypothetical protein.
  
     0.771
SDQ46308.1
TrbL/VirB6 plasmid conjugal transfer protein.
  
     0.766
SDQ83859.1
Integrin beta 8.
  
     0.762
SDQ97903.1
Suppressor of fused protein (SUFU).
  
     0.758
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
 
 
 0.758
SDR18108.1
Hypothetical protein.
  
     0.753
SDR17130.1
Formate dehydrogenase beta subunit.
   
    0.746
Your Current Organism:
Thermostaphylospora chromogena
NCBI taxonomy Id: 35622
Other names: ATCC 43196, Actinobifida chromogena, DSM 43794, IFO 16096, JCM 6244, NBRC 16096, NCIB 10212, NCIB:10212, NCIMB 10212, NRRL B-16983, T. chromogena, Thermomonospora chromogena, strain Agre no. 577
Server load: low (16%) [HD]