STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aocu_11710Mandelate racemase/muconate lactonizing enzyme. (366 aa)    
Predicted Functional Partners:
galM2
Aldose 1-epimerase.
 
     0.774
Aocu_11720
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.661
Aocu_11790
ATPase, BadF/BadG/BcrA/BcrD type.
 
    0.601
Aocu_00080
NAD(P)-binding oxidoreductase.
 
   
 0.533
pgl
6-phosphogluconolactonase.
 
    0.493
Aocu_11730
Probable transcription regulator.
       0.484
Aocu_11810
Hypothetical protein, uncharacterised UCP016719.
  
    0.483
Aocu_11690
Pectin lyase.
       0.479
dnaB2
Replicative DNA helicase DnaB; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
    0.476
Aocu_11680
Pectin lyase.
 
     0.431
Your Current Organism:
Acholeplasma oculi
NCBI taxonomy Id: 35623
Other names: A. oculi, ATCC 27350, Acholeplasma oculusi, NCTC 10150
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