Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEW48139.1 | SEW48144.1 | SAMN05421841_3729 | SAMN05421841_3730 | Hypothetical protein. | dTDP-L-rhamnose 4-epimerase. | 0.849 |
SEW48139.1 | SEW48146.1 | SAMN05421841_3729 | SAMN05421841_3731 | Hypothetical protein. | Glycosyltransferase involved in cell wall bisynthesis. | 0.732 |
SEW48139.1 | SEW48149.1 | SAMN05421841_3729 | SAMN05421841_3732 | Hypothetical protein. | Hypothetical protein. | 0.740 |
SEW48139.1 | recR | SAMN05421841_3729 | SAMN05421841_3733 | Hypothetical protein. | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.661 |
SEW48144.1 | SEW48139.1 | SAMN05421841_3730 | SAMN05421841_3729 | dTDP-L-rhamnose 4-epimerase. | Hypothetical protein. | 0.849 |
SEW48144.1 | SEW48146.1 | SAMN05421841_3730 | SAMN05421841_3731 | dTDP-L-rhamnose 4-epimerase. | Glycosyltransferase involved in cell wall bisynthesis. | 0.809 |
SEW48144.1 | SEW48149.1 | SAMN05421841_3730 | SAMN05421841_3732 | dTDP-L-rhamnose 4-epimerase. | Hypothetical protein. | 0.732 |
SEW48144.1 | recR | SAMN05421841_3730 | SAMN05421841_3733 | dTDP-L-rhamnose 4-epimerase. | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.661 |
SEW48146.1 | SEW48139.1 | SAMN05421841_3731 | SAMN05421841_3729 | Glycosyltransferase involved in cell wall bisynthesis. | Hypothetical protein. | 0.732 |
SEW48146.1 | SEW48144.1 | SAMN05421841_3731 | SAMN05421841_3730 | Glycosyltransferase involved in cell wall bisynthesis. | dTDP-L-rhamnose 4-epimerase. | 0.809 |
SEW48146.1 | SEW48149.1 | SAMN05421841_3731 | SAMN05421841_3732 | Glycosyltransferase involved in cell wall bisynthesis. | Hypothetical protein. | 0.773 |
SEW48146.1 | recR | SAMN05421841_3731 | SAMN05421841_3733 | Glycosyltransferase involved in cell wall bisynthesis. | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.697 |
SEW48149.1 | SEW48139.1 | SAMN05421841_3732 | SAMN05421841_3729 | Hypothetical protein. | Hypothetical protein. | 0.740 |
SEW48149.1 | SEW48144.1 | SAMN05421841_3732 | SAMN05421841_3730 | Hypothetical protein. | dTDP-L-rhamnose 4-epimerase. | 0.732 |
SEW48149.1 | SEW48146.1 | SAMN05421841_3732 | SAMN05421841_3731 | Hypothetical protein. | Glycosyltransferase involved in cell wall bisynthesis. | 0.773 |
SEW48149.1 | recR | SAMN05421841_3732 | SAMN05421841_3733 | Hypothetical protein. | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.697 |
SEW49198.1 | polA | SAMN05421841_4038 | SAMN05421841_3647 | DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.668 |
SEW49198.1 | recF | SAMN05421841_4038 | SAMN05421841_0875 | DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. | DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | 0.503 |
SEW49198.1 | recR | SAMN05421841_4038 | SAMN05421841_3733 | DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.920 |
dnaA | polA | SAMN05421841_2110 | SAMN05421841_3647 | Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.691 |
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