STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW08328.1TRAP-type C4-dicarboxylate transport system, substrate-binding protein. (343 aa)    
Predicted Functional Partners:
SDW08245.1
TRAP transporter, DctM subunit.
 
    0.846
SDW47604.1
TRAP transporter, DctM subunit.
  
    0.781
SDW11739.1
TRAP transporter, DctM subunit.
  
    0.781
SDW04427.1
TRAP transporter, DctM subunit.
  
    0.781
SDW69529.1
TRAP transporter, DctM subunit.
  
    0.781
SDX23120.1
TRAP transporter, DctM subunit.
  
    0.781
SDX28401.1
TRAP transporter, DctM subunit.
  
    0.781
SDX33238.1
TRAP transporter, DctM subunit.
  
    0.781
SDX33668.1
TRAP transporter, DctM subunit.
  
    0.781
SDW11445.1
TRAP transporter, DctM subunit.
  
    0.776
Your Current Organism:
Albimonas donghaensis
NCBI taxonomy Id: 356660
Other names: A. donghaensis, Albimonas donghaensis Lim et al. 2008, DSM 17890, KCTC 12586, Paracoccus sp. DS2, strain DS2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.