Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDX02500.1 | SDX02531.1 | SAMN05444336_10370 | SAMN05444336_10371 | Recombination protein MgsA. | Hypothetical protein. | 0.486 |
SDX02500.1 | SDX05932.1 | SAMN05444336_10370 | SAMN05444336_103170 | Recombination protein MgsA. | DNA translocase FtsK. | 0.443 |
SDX02500.1 | SDX29448.1 | SAMN05444336_10370 | SAMN05444336_104202 | Recombination protein MgsA. | ATP-dependent DNA helicase RecQ. | 0.599 |
SDX02500.1 | SDX51364.1 | SAMN05444336_10370 | SAMN05444336_10638 | Recombination protein MgsA. | DNA-O6-methylguanine--protein-cysteine S-methyltransferase /Transcriptional regulator Ada. | 0.417 |
SDX02500.1 | dinB | SAMN05444336_10370 | SAMN05444336_1095 | Recombination protein MgsA. | DNA polymerase-4; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.454 |
SDX02500.1 | nadE | SAMN05444336_10370 | SAMN05444336_101824 | Recombination protein MgsA. | NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.552 |
SDX02500.1 | polA | SAMN05444336_10370 | SAMN05444336_1109 | Recombination protein MgsA. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.565 |
SDX02500.1 | ruvB | SAMN05444336_10370 | SAMN05444336_102284 | Recombination protein MgsA. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.492 |
SDX02531.1 | SDX02500.1 | SAMN05444336_10371 | SAMN05444336_10370 | Hypothetical protein. | Recombination protein MgsA. | 0.486 |
SDX05932.1 | SDX02500.1 | SAMN05444336_103170 | SAMN05444336_10370 | DNA translocase FtsK. | Recombination protein MgsA. | 0.443 |
SDX05932.1 | SDX51364.1 | SAMN05444336_103170 | SAMN05444336_10638 | DNA translocase FtsK. | DNA-O6-methylguanine--protein-cysteine S-methyltransferase /Transcriptional regulator Ada. | 0.410 |
SDX05932.1 | polA | SAMN05444336_103170 | SAMN05444336_1109 | DNA translocase FtsK. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.700 |
SDX05932.1 | ruvB | SAMN05444336_103170 | SAMN05444336_102284 | DNA translocase FtsK. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.678 |
SDX29448.1 | SDX02500.1 | SAMN05444336_104202 | SAMN05444336_10370 | ATP-dependent DNA helicase RecQ. | Recombination protein MgsA. | 0.599 |
SDX29448.1 | dinB | SAMN05444336_104202 | SAMN05444336_1095 | ATP-dependent DNA helicase RecQ. | DNA polymerase-4; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.714 |
SDX29448.1 | polA | SAMN05444336_104202 | SAMN05444336_1109 | ATP-dependent DNA helicase RecQ. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.994 |
SDX51364.1 | SDX02500.1 | SAMN05444336_10638 | SAMN05444336_10370 | DNA-O6-methylguanine--protein-cysteine S-methyltransferase /Transcriptional regulator Ada. | Recombination protein MgsA. | 0.417 |
SDX51364.1 | SDX05932.1 | SAMN05444336_10638 | SAMN05444336_103170 | DNA-O6-methylguanine--protein-cysteine S-methyltransferase /Transcriptional regulator Ada. | DNA translocase FtsK. | 0.410 |
SDX51364.1 | dinB | SAMN05444336_10638 | SAMN05444336_1095 | DNA-O6-methylguanine--protein-cysteine S-methyltransferase /Transcriptional regulator Ada. | DNA polymerase-4; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.662 |
SDX51364.1 | polA | SAMN05444336_10638 | SAMN05444336_1109 | DNA-O6-methylguanine--protein-cysteine S-methyltransferase /Transcriptional regulator Ada. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.870 |
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