SDX27877.1 protein (Albimonas donghaensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDX27877.1

Amino acid ABC transporter membrane protein, PAAT family. (298 aa)

Predicted Functional Partners:

SDX61820.1

0.971

SDX88333.1

0.970

SDW50056.1

0.969

SDX66714.1

0.964

SDW50024.1

0.918

SDW26298.1

0.909

SDX27916.1

0.903

SDX66683.1

0.889

SDX88391.1

0.863

SDX61849.1

0.857

Your Current Organism:

Albimonas donghaensis

NCBI taxonomy Id: 356660
Other names: A. donghaensis, Albimonas donghaensis Lim et al. 2008, DSM 17890, KCTC 12586, Paracoccus sp. DS2, strain DS2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDW26298.1	SDW50024.1	SAMN05444336_101539	SAMN05444336_1011190	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.724
SDW26298.1	SDW50056.1	SAMN05444336_101539	SAMN05444336_1011191	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter ATP-binding protein, PAAT family.	0.931
SDW26298.1	SDX27877.1	SAMN05444336_101539	SAMN05444336_104155	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter membrane protein, PAAT family.	0.909
SDW26298.1	SDX27916.1	SAMN05444336_101539	SAMN05444336_104156	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family.	0.480
SDW26298.1	SDX61820.1	SAMN05444336_101539	SAMN05444336_107114	Amino acid ABC transporter substrate-binding protein, PAAT family.	L-glutamine ABC transporter ATP-binding protein.	0.936
SDW26298.1	SDX61849.1	SAMN05444336_101539	SAMN05444336_107115	Amino acid ABC transporter substrate-binding protein, PAAT family.	General L-amino acid transport system permease protein.	0.963
SDW26298.1	SDX66683.1	SAMN05444336_101539	SAMN05444336_10843	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.637
SDW26298.1	SDX66714.1	SAMN05444336_101539	SAMN05444336_10844	Amino acid ABC transporter substrate-binding protein, PAAT family.	Polar amino acid transport system ATP-binding protein.	0.918
SDW26298.1	SDX88333.1	SAMN05444336_101539	SAMN05444336_11242	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter ATP-binding protein, PAAT family.	0.931
SDW26298.1	SDX88391.1	SAMN05444336_101539	SAMN05444336_11244	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family.	0.747
SDW50024.1	SDW26298.1	SAMN05444336_1011190	SAMN05444336_101539	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.724
SDW50024.1	SDW50056.1	SAMN05444336_1011190	SAMN05444336_1011191	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter ATP-binding protein, PAAT family.	0.955
SDW50024.1	SDX27877.1	SAMN05444336_1011190	SAMN05444336_104155	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter membrane protein, PAAT family.	0.918
SDW50024.1	SDX61820.1	SAMN05444336_1011190	SAMN05444336_107114	Amino acid ABC transporter substrate-binding protein, PAAT family.	L-glutamine ABC transporter ATP-binding protein.	0.903
SDW50024.1	SDX61849.1	SAMN05444336_1011190	SAMN05444336_107115	Amino acid ABC transporter substrate-binding protein, PAAT family.	General L-amino acid transport system permease protein.	0.919
SDW50024.1	SDX66683.1	SAMN05444336_1011190	SAMN05444336_10843	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.577
SDW50024.1	SDX66714.1	SAMN05444336_1011190	SAMN05444336_10844	Amino acid ABC transporter substrate-binding protein, PAAT family.	Polar amino acid transport system ATP-binding protein.	0.903
SDW50024.1	SDX88333.1	SAMN05444336_1011190	SAMN05444336_11242	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter ATP-binding protein, PAAT family.	0.911
SDW50056.1	SDW26298.1	SAMN05444336_1011191	SAMN05444336_101539	Amino acid ABC transporter ATP-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.931
SDW50056.1	SDW50024.1	SAMN05444336_1011191	SAMN05444336_1011190	Amino acid ABC transporter ATP-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.955