STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX28331.1crotonobetaine/carnitine-CoA ligase. (536 aa)    
Predicted Functional Partners:
SDX15525.1
Acyl transferase domain-containing protein.
 
 0.874
SDX05248.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
    
   0.830
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.730
SDX28365.1
Biotin-requiring enzyme.
  
  0.699
SDX15429.1
Exopolysaccharide biosynthesis protein YbjH.
    
  0.678
SDX42328.1
PAP2 superfamily protein.
    
  0.678
SDX92616.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
 
0.588
SDX28229.1
propionyl-CoA carboxylase beta chain.
  
  0.578
SDX28296.1
Transcriptional regulator, TetR family.
       0.572
SDX28265.1
Urea carboxylase/pyruvate carboxylase subunit B/acetyl-CoA carboxylase biotin carboxyl carrier protein.
  
 
  0.551
Your Current Organism:
Albimonas donghaensis
NCBI taxonomy Id: 356660
Other names: A. donghaensis, Albimonas donghaensis Lim et al. 2008, DSM 17890, KCTC 12586, Paracoccus sp. DS2, strain DS2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.