STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX40664.1Choline dehydrogenase. (543 aa)    
Predicted Functional Partners:
SDX41160.1
KAP family P-loop domain-containing protein.
    
 0.806
SDX42359.1
Adenylate cyclase, class 3.
   
  0.721
SDW50359.1
Sulfotransferase family protein.
    
  0.719
SDW20115.1
Tfp pilus assembly protein PilF.
    
  0.719
SDW07644.1
Ca-activated chloride channel family protein.
    
  0.719
SDW70211.1
Sulfotransferase family protein.
    
  0.719
SDW77528.1
Tetratricopeptide repeat-containing protein.
    
  0.719
SDX23495.1
Methyltransferase, FkbM family.
    
  0.719
SDX25504.1
Tetratricopeptide repeat-containing protein.
    
  0.719
SDX25930.1
Tetratricopeptide repeat-containing protein.
    
  0.719
Your Current Organism:
Albimonas donghaensis
NCBI taxonomy Id: 356660
Other names: A. donghaensis, Albimonas donghaensis Lim et al. 2008, DSM 17890, KCTC 12586, Paracoccus sp. DS2, strain DS2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.