STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX40736.1Anti-sigma-K factor RskA. (264 aa)    
Predicted Functional Partners:
SDX40694.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 
 0.963
SDX40664.1
Choline dehydrogenase.
       0.531
SDX96117.1
RNA polymerase sigma-70 factor, ECF subfamily.
   
 
 0.510
SDX98854.1
Protein of unknown function.
 
 
 
 0.479
SDW75783.1
Hypothetical protein.
 
     0.465
SDX59744.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.437
SDW90033.1
RNA polymerase sigma-70 factor, ECF subfamily.
   
 
 0.435
SDX69319.1
RNA polymerase sigma-70 factor, ECF subfamily.
   
 
 0.432
Your Current Organism:
Albimonas donghaensis
NCBI taxonomy Id: 356660
Other names: A. donghaensis, Albimonas donghaensis Lim et al. 2008, DSM 17890, KCTC 12586, Paracoccus sp. DS2, strain DS2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.