SDX51096.1 protein (Albimonas donghaensis) - STRING interaction network

Nodes:

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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protein homology

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Score

SDX51096.1

Peptide/nickel transport system permease protein. (404 aa)

Predicted Functional Partners:

SDX51166.1

0.992

SDX51133.1

0.966

SDX10689.1

0.800

SDX94374.1

0.796

SDX51194.1

0.789

SDX51064.1

0.773

SDX50924.1

0.772

SDX50953.1

0.769

SDX33918.1

0.765

SDX50990.1

0.764

Your Current Organism:

Albimonas donghaensis

NCBI taxonomy Id: 356660
Other names: A. donghaensis, Albimonas donghaensis Lim et al. 2008, DSM 17890, KCTC 12586, Paracoccus sp. DS2, strain DS2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDX10689.1	SDX50924.1	SAMN05444336_103320	SAMN05444336_10624	Putative ABC transport system ATP-binding protein.	Predicted glycosyl transferase.	0.779
SDX10689.1	SDX50953.1	SAMN05444336_103320	SAMN05444336_10625	Putative ABC transport system ATP-binding protein.	Glycosyl transferases group 1.	0.816
SDX10689.1	SDX50990.1	SAMN05444336_103320	SAMN05444336_10626	Putative ABC transport system ATP-binding protein.	Glycosyltransferase involved in cell wall bisynthesis.	0.818
SDX10689.1	SDX51064.1	SAMN05444336_103320	SAMN05444336_10628	Putative ABC transport system ATP-binding protein.	Predicted glycosyl transferase.	0.777
SDX10689.1	SDX51096.1	SAMN05444336_103320	SAMN05444336_10629	Putative ABC transport system ATP-binding protein.	Peptide/nickel transport system permease protein.	0.800
SDX10689.1	SDX51133.1	SAMN05444336_103320	SAMN05444336_10630	Putative ABC transport system ATP-binding protein.	Peptide/nickel transport system permease protein.	0.802
SDX10689.1	SDX51166.1	SAMN05444336_103320	SAMN05444336_10631	Putative ABC transport system ATP-binding protein.	Peptide/nickel transport system substrate-binding protein.	0.804
SDX33918.1	SDX51096.1	SAMN05444336_104343	SAMN05444336_10629	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.765
SDX33918.1	SDX51133.1	SAMN05444336_104343	SAMN05444336_10630	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.494
SDX33918.1	SDX51194.1	SAMN05444336_104343	SAMN05444336_10632	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.458
SDX50924.1	SDX10689.1	SAMN05444336_10624	SAMN05444336_103320	Predicted glycosyl transferase.	Putative ABC transport system ATP-binding protein.	0.779
SDX50924.1	SDX50953.1	SAMN05444336_10624	SAMN05444336_10625	Predicted glycosyl transferase.	Glycosyl transferases group 1.	0.964
SDX50924.1	SDX50990.1	SAMN05444336_10624	SAMN05444336_10626	Predicted glycosyl transferase.	Glycosyltransferase involved in cell wall bisynthesis.	0.920
SDX50924.1	SDX51064.1	SAMN05444336_10624	SAMN05444336_10628	Predicted glycosyl transferase.	Predicted glycosyl transferase.	0.766
SDX50924.1	SDX51096.1	SAMN05444336_10624	SAMN05444336_10629	Predicted glycosyl transferase.	Peptide/nickel transport system permease protein.	0.772
SDX50924.1	SDX51133.1	SAMN05444336_10624	SAMN05444336_10630	Predicted glycosyl transferase.	Peptide/nickel transport system permease protein.	0.773
SDX50924.1	SDX51166.1	SAMN05444336_10624	SAMN05444336_10631	Predicted glycosyl transferase.	Peptide/nickel transport system substrate-binding protein.	0.775
SDX50924.1	SDX94374.1	SAMN05444336_10624	SAMN05444336_11429	Predicted glycosyl transferase.	Hypothetical protein.	0.779
SDX50953.1	SDX10689.1	SAMN05444336_10625	SAMN05444336_103320	Glycosyl transferases group 1.	Putative ABC transport system ATP-binding protein.	0.816
SDX50953.1	SDX50924.1	SAMN05444336_10625	SAMN05444336_10624	Glycosyl transferases group 1.	Predicted glycosyl transferase.	0.964

page 1 of 5

Network Stats

number of nodes:

11

number of edges:

42

average node degree:

7.64

avg. local clustering coefficient:

0.803

expected number of edges:

11

PPI enrichment p-value:

3.1e-12

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005976

Polysaccharide metabolic process

8 of 71

1.73

3.34

4.03e-10

GO:0000271

Polysaccharide biosynthetic process

6 of 65

1.65

2.35

7.59e-07

GO:0016051

Carbohydrate biosynthetic process

7 of 97

1.54

2.32

1.40e-07

GO:0033692

Cellular polysaccharide biosynthetic process

5 of 47

1.71

2.12

9.80e-06

GO:0005975

Carbohydrate metabolic process

9 of 237

1.26

1.78

3.28e-08

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0008767

UDP-galactopyranose mutase activity

2 of 2

2.68

0.93

0.0210

GO:0016740

Transferase activity

8 of 832

0.66

0.43

0.0210

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:5129

O-Antigen nucleotide sugar biosynthesis, and Glycosyl transferases group 1

8 of 28

2.14

5.64

4.67e-14

CL:5130

O-Antigen nucleotide sugar biosynthesis

7 of 23

2.16

5.09

3.32e-12

CL:5119

Amino sugar and nucleotide sugar metabolism, and Polysaccharide biosynthetic process

10 of 83

1.76

4.43

3.57e-15

CL:5117

Amino sugar and nucleotide sugar metabolism, and Polysaccharide biosynthetic process

11 of 101

1.72

4.4

2.67e-16

CL:5158

Mannose-6-phosphate isomerase, and NAD dependent epimerase/dehydratase family

3 of 6

2.38

2.29

4.59e-05

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00541

O-Antigen nucleotide sugar biosynthesis

5 of 44

1.74

2.31

3.15e-06

map00520

Amino sugar and nucleotide sugar metabolism

4 of 68

1.45

1.3

0.00062

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0548

Nucleotidyltransferase

3 of 60

1.38

0.69

0.0329

KW-0808

Transferase

7 of 695

0.68

0.41

0.0329

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