SDX65676.1 protein (Albimonas donghaensis) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

SDX65676.1

Hypothetical protein. (247 aa)

Predicted Functional Partners:

SDX65708.1

0.921

SDX15525.1

0.803

SDX69869.1

0.609

SDX41040.1

0.576

SDX80659.1

0.573

SDW22468.1

0.559

SDX65982.1

0.558

SDX28365.1

0.557

SDX98566.1

0.553

SDX41948.1

0.550

Your Current Organism:

Albimonas donghaensis

NCBI taxonomy Id: 356660
Other names: A. donghaensis, Albimonas donghaensis Lim et al. 2008, DSM 17890, KCTC 12586, Paracoccus sp. DS2, strain DS2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDW22468.1	SDX15525.1	SAMN05444336_101452	SAMN05444336_103465	Biotin-requiring enzyme.	Acyl transferase domain-containing protein.	0.971
SDW22468.1	SDX28365.1	SAMN05444336_101452	SAMN05444336_104169	Biotin-requiring enzyme.	Biotin-requiring enzyme.	0.807
SDW22468.1	SDX41040.1	SAMN05444336_101452	SAMN05444336_10521	Biotin-requiring enzyme.	Carboxyl transferase domain-containing protein.	0.807
SDW22468.1	SDX65676.1	SAMN05444336_101452	SAMN05444336_10812	Biotin-requiring enzyme.	Hypothetical protein.	0.559
SDW22468.1	SDX65982.1	SAMN05444336_101452	SAMN05444336_10822	Biotin-requiring enzyme.	Biotin-requiring enzyme.	0.805
SDW22468.1	SDX69869.1	SAMN05444336_101452	SAMN05444336_108150	Biotin-requiring enzyme.	Biotin-requiring enzyme.	0.973
SDW22468.1	SDX98566.1	SAMN05444336_101452	SAMN05444336_1187	Biotin-requiring enzyme.	Biotin-requiring enzyme.	0.808
SDX15525.1	SDW22468.1	SAMN05444336_103465	SAMN05444336_101452	Acyl transferase domain-containing protein.	Biotin-requiring enzyme.	0.971
SDX15525.1	SDX28365.1	SAMN05444336_103465	SAMN05444336_104169	Acyl transferase domain-containing protein.	Biotin-requiring enzyme.	0.971
SDX15525.1	SDX41040.1	SAMN05444336_103465	SAMN05444336_10521	Acyl transferase domain-containing protein.	Carboxyl transferase domain-containing protein.	0.971
SDX15525.1	SDX41948.1	SAMN05444336_103465	SAMN05444336_10548	Acyl transferase domain-containing protein.	NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.	0.774
SDX15525.1	SDX65676.1	SAMN05444336_103465	SAMN05444336_10812	Acyl transferase domain-containing protein.	Hypothetical protein.	0.803
SDX15525.1	SDX65982.1	SAMN05444336_103465	SAMN05444336_10822	Acyl transferase domain-containing protein.	Biotin-requiring enzyme.	0.971
SDX15525.1	SDX69869.1	SAMN05444336_103465	SAMN05444336_108150	Acyl transferase domain-containing protein.	Biotin-requiring enzyme.	0.981
SDX15525.1	SDX98566.1	SAMN05444336_103465	SAMN05444336_1187	Acyl transferase domain-containing protein.	Biotin-requiring enzyme.	0.971
SDX28365.1	SDW22468.1	SAMN05444336_104169	SAMN05444336_101452	Biotin-requiring enzyme.	Biotin-requiring enzyme.	0.807
SDX28365.1	SDX15525.1	SAMN05444336_104169	SAMN05444336_103465	Biotin-requiring enzyme.	Acyl transferase domain-containing protein.	0.971
SDX28365.1	SDX41040.1	SAMN05444336_104169	SAMN05444336_10521	Biotin-requiring enzyme.	Carboxyl transferase domain-containing protein.	0.808
SDX28365.1	SDX65676.1	SAMN05444336_104169	SAMN05444336_10812	Biotin-requiring enzyme.	Hypothetical protein.	0.557
SDX28365.1	SDX65982.1	SAMN05444336_104169	SAMN05444336_10822	Biotin-requiring enzyme.	Biotin-requiring enzyme.	0.808

page 1 of 4

Network Stats

number of nodes:

11

number of edges:

25

average node degree:

4.55

avg. local clustering coefficient:

0.773

expected number of edges:

11

PPI enrichment p-value:

0.000227

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:1903509

Liposaccharide metabolic process

5 of 33

1.69

1.86

5.08e-05

GO:0009103

Lipopolysaccharide biosynthetic process

4 of 20

1.81

1.68

0.00028

GO:0009247

Glycolipid biosynthetic process

3 of 15

1.81

1.32

0.0021

GO:0009312

Oligosaccharide biosynthetic process

3 of 18

1.73

1.26

0.0024

GO:0008610

Lipid biosynthetic process

5 of 73

1.34

1.24

0.00050

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2505

Mostly uncharacterized, incl. Protein glycosylation, and RutC-like superfamily

6 of 12

2.21

4.09

2.38e-09

CL:2507

Mixed, incl. RutC-like superfamily, and Sulfatase-modifying factor enzyme 1

2 of 6

2.03

0.86

0.0237

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00540

Lipopolysaccharide biosynthesis

5 of 38

1.63

2.02

9.37e-06

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